The EADGENE and SABRE post-analyses workshop
نویسندگان
چکیده
Address: 1INRA AgroParisTech, Animal Genetics and Integrative Biology, Populations Statistics Genomes, 78350 Jouy-en-Josas, France, 2Aarhus University, Faculty of Agricultural Sciences, Department of Genetics and Biotechnology, P.O. Box 50 DK-8830 Tjele, Denmark, 3INRA, UMR444 Laboratoire de Génétique Cellulaire, F-31326 Castanet-Tolosan, France, 4Sigenae UR875 Biométrie et Intelligence Artificielle, INRA, BP 52627, 31326 Castanet-Tolosan Cedex, France and 5Roslin Institute and R(D)SVS, University of Edinburgh, Roslin, EH25 9PS, UK
منابع مشابه
UvA - DARE ( Digital Academic Repository ) OligoRAP - an Oligo Re - Annotation Pipeline to improve annotation and estimate target specificity
Background: High throughput gene expression studies using oligonucleotide microarrays depend on the specificity of each oligonucleotide (oligo or probe) for its target gene. However, target specific probes can only be designed when a reference genome of the species at hand were completely sequenced, when this genome were completely annotated and when the genetic variation of the sampled individ...
متن کاملBiological pathway analysis by ArrayUnlock and Ingenuity Pathway Analysis
BACKGROUND Once a list of differentially expressed genes has been identified from a microarray experiment, a subsequent post-analysis task is required in order to find the main biological processes associated to the experimental system. This paper describes two pathways analysis tools, ArrayUnlock and Ingenuity Pathways Analysis (IPA) to deal with the post-analyses of microarray data, in the co...
متن کاملPredicting qualitative phenotypes from microarray data – the Eadgene pig data set
BACKGROUND The aim of this work was to study the performances of 2 predictive statistical tools on a data set that was given to all participants of the Eadgene-SABRE Post Analyses Working Group, namely the Pig data set of Hazard et al. (2008). The data consisted of 3686 gene expressions measured on 24 animals partitioned in 2 genotypes and 2 treatments. The objective was to find biomarkers that...
متن کاملMethods for interpreting lists of affected genes obtained in a DNA microarray experiment
BACKGROUND The aim of this paper was to describe and compare the methods used and the results obtained by the participants in a joint EADGENE (European Animal Disease Genomic Network of Excellence) and SABRE (Cutting Edge Genomics for Sustainable Animal Breeding) workshop focusing on post analysis of microarray data. The participating groups were provided with identical lists of microarray prob...
متن کاملOligoRAP – an Oligo Re-Annotation Pipeline to improve annotation and estimate target specificity
BACKGROUND High throughput gene expression studies using oligonucleotide microarrays depend on the specificity of each oligonucleotide (oligo or probe) for its target gene. However, target specific probes can only be designed when a reference genome of the species at hand were completely sequenced, when this genome were completely annotated and when the genetic variation of the sampled individu...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید
ثبت ناماگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید
ورودعنوان ژورنال:
- BMC Proceedings
دوره 3 شماره
صفحات -
تاریخ انتشار 2009